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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=LinTInd
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Lineage tracing by indels"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-ape
r-biocgenerics
r-biostrings
r-cowplot
r-data.tree
r-dplyr
r-ggnewscale
r-ggplot2
r-ggtree
r-iranges
r-networkd3
r-pheatmap
r-purrr
r-pwalign
r-reshape2
r-rlist
r-s4vectors
r-stringdist
r-stringr
)
optdepends=(
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('bd5c8c848408028ffc8fd1bd5529d586')
b2sums=('ea8db25d21644283bebf9bd52de15deb8bfaca0991abe5548b379730929e10c9b630c9a483acf82b56d0900816a191910a7fede32958dd936bf9e489ff9207d0')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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