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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=lpsymphony
_pkgver=1.34.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Symphony integer linear programming solver in R"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=(EPL)
depends=(
coin-or-symphony
r
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
"system-symphony.patch")
md5sums=('54ce27cefa98d444f06b137ba5ca4a70'
'5fe82566bce5f45a9d9d8682e51ebfaa')
b2sums=('14f8614574c92810a861dbf75cb7f13d524aef3aa52fdaff7d1e3fa458f2ff4b3f0a5a12570dfdead73621d5a01b929308812fc7574ff8267e7940df6bb15432'
'86b91dad7e7979ff31b83a876c5fb64f626b8dbddc389e2e91ba206c9644f88ad482d6bd8e4b2bfd841fc8d4fd8e00bc6e7529645bae75e4af18eef1fb5ce022')
prepare() {
# build against system SYMPHONY
patch -Np1 -i system-symphony.patch
}
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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