blob: 7ec0eae01f7246b6683266d16b5df608ed9b7dc3 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=mashr
_pkgver=0.2.79
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="Multivariate Adaptive Shrinkage"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=('BSD-3-Clause')
depends=(
blas
gsl
lapack
r-abind
r-ashr
r-assertthat
r-mvtnorm
r-plyr
r-rcpp
r-rmeta
r-softimpute
)
makedepends=(
r-rcpparmadillo
r-rcppgsl
)
checkdepends=(
r-testthat
)
optdepends=(
r-corrplot
r-ebnm
r-flashier
r-kableextra
r-knitr
r-profmem
r-rebayes
r-rmarkdown
r-testthat
)
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('3ddec828c72b1d1b594f35a3934e7f88')
b2sums=('6bf494ce40e788cf4584cdc60d3feeed81db1623f19658a7db6f96f00c37d8cfda8d70b8f40208cb81df5ec72170764c19dc6dc407296f77f2f8db5e6a6596d0')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
|