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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=MAST
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=2
pkgdesc="Model-based Analysis of Single Cell Transcriptomics"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-or-later')
depends=(
r-abind
r-biobase
r-biocgenerics
r-data.table
r-ggplot2
r-plyr
r-progress
r-reshape2
r-s4vectors
r-singlecellexperiment
r-stringr
r-summarizedexperiment
)
optdepends=(
r-biocstyle
r-blme
r-car
r-delayedarray
r-dplyr
r-gdata
r-ggally
r-gseabase
r-hdf5array
r-knitr
r-limma
r-lme4
r-nmf
r-numderiv
r-rcolorbrewer
r-rmarkdown
r-roxygen2
r-rsvd
r-scater
r-testthat
r-txdb.hsapiens.ucsc.hg19.knowngene
r-zinbwave
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('5b2d5c6a33243cdf9c2e4440ba4bf1da')
b2sums=('c2cbbaf06959e1aa058dc006340fb50d58c6bc6db2207053cdf68dbfd522a30165fdad3b063bbacb970b4e2a3d81934c35c3871f024c0ffbdad0bfe013c3dc72')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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