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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=MEAL
_pkgver=1.32.0
pkgname=r-${_pkgname,,}
pkgver=1.32.0
pkgrel=1
pkgdesc='Perform methylation analysis'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-biobase
r-biocgenerics
r-genomicranges
r-ggplot2
r-gviz
r-iranges
r-isva
r-limma
r-matrixstats
r-minfi
r-missmethyl
r-multidataset
r-permute
r-s4vectors
r-smartsva
r-summarizedexperiment
r-vegan
)
optdepends=(
r-biocstyle
r-brgedata
r-illuminahumanmethylation450kanno.ilmn12.hg19
r-illuminahumanmethylationepicanno.ilm10b2.hg19
r-knitr
r-minfidata
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('57408de21e8deb3ed72b6ef0d5b27d5a1748c1f541929c581151c3f3141f8b6f')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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