blob: 388d6f75e0bb227feef798e318bad652ce7e5296 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
|
# system requirements: Meme Suite (v5.3.3 or above)<http://meme-suite.org/doc/download.html>
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=memes
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=1.12.0
pkgrel=1
pkgdesc='motif matching, comparison, and de novo discovery using the MEME Suite'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-biostrings
r-cmdfun
r-dplyr
r-genomicranges
r-ggplot2
r-ggseqlogo
r-magrittr
r-matrixstats
r-patchwork
r-processx
r-purrr
r-readr
r-rlang
r-tibble
r-tidyr
r-universalmotif
r-usethis
r-xml2
)
optdepends=(
r-bsgenome.dmelanogaster.ucsc.dm3
r-bsgenome.dmelanogaster.ucsc.dm6
r-covr
r-cowplot
r-forcats
r-knitr
r-motifdb
r-pheatmap
r-plyranges
r-pmcmrplus
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('90f4684bf8c9043d0fa0b8ac5df887d04b0d298caff1fa61faa7cc479b87190e')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
|