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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=MetaboAnnotation
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Utilities for Annotation of Metabolomics Data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationhub
r-biocgenerics
r-biocparallel
r-compounddb
r-metabocoreutils
r-mscoreutils
r-protgenerics
r-qfeatures
r-s4vectors
r-spectra
r-summarizedexperiment
)
checkdepends=(
r-msdata
r-mzr
r-testthat
)
optdepends=(
r-biocstyle
r-dt
r-knitr
r-microbenchmark
r-msdata
r-mzr
r-plotly
r-rmarkdown
r-shiny
r-shinyjs
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('5220af7284f5d8b782230028ba1406fe')
b2sums=('16ad758a7daaeeaf2b90eb513087cc3773d254963f1e5fef1532b6c103d04d47cba8aa212e335ffc33c76bf6dd72968336a4e1924f560acd3259122be4a53b36')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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