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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=MetaPhOR
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Metabolic Pathway Analysis of RNA"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-clusterprofiler
r-ggplot2
r-ggrepel
r-pheatmap
r-rcy3
r-recordlinkage
r-stringr
)
optdepends=(
"cytoscape: cytoPath()"
r-biocstyle
r-kableextra
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('0490cd26762bc9c50cd36c9525d327e5')
b2sums=('a6620d8403939bdb657cb54c4b7d99feea58a4c67b593e342f5301eb92837a669f9dcbe1c0045c913ac6bb0586c05eb7254de1e3748fd8796b47705868f7606d')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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