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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=MethCP
_pkgver=1.13.0
pkgname=r-${_pkgname,,}
pkgver=1.13.0
pkgrel=3
pkgdesc='Differential methylation anlsysis for bisulfite sequencing data'
arch=('any')
url="https://bioconductor.org/packages/3.17/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-biocparallel
r-bsseq
r-dnacopy
r-dss
r-genomeinfodb
r-genomicranges
r-iranges
r-methylkit
r-s4vectors
)
optdepends=(
r-knitr
r-rmarkdown
r-testthat
)
makedepends=(
git
)
source=("git+https://git.bioconductor.org/packages/${_pkgname}")
sha256sums=('SKIP')
build() {
tar -zcvf ${_pkgname}_${_pkgver}.tar.gz ${_pkgname}
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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