PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=MethPed
_pkgver=1.34.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
  r-biobase
  r-randomforest
)
optdepends=(
  r-biocstyle
  r-impute
  r-knitr
  r-markdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('181fbe7f9413884ea5adac4fe74f1f99')
b2sums=('6fb0de7ac8ebd8dd7c6df23184a5f3038ad3fd2d2b0988e98670ba4540af0c324c351f04d2b5927387da6c2f86420e3c682949261b140f56055b437d234c51c6')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}