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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=MethReg
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Assessing the regulatory potential of DNA methylation regions or sites on gene transcription"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-annotationhub
r-delayedarray
r-dplyr
r-experimenthub
r-genomicranges
r-ggplot2
r-ggpubr
r-iranges
r-jaspar2024
r-openxlsx
r-plyr
r-progress
r-pscl
r-readr
r-rlang
r-rsqlite
r-s4vectors
r-sesame
r-sesamedata
r-sfsmisc
r-stringr
r-summarizedexperiment
r-tfbstools
r-tibble
r-tidyr
)
optdepends=(
r-biocfilecache
r-biocstyle
r-biomart
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.hsapiens.ucsc.hg38
r-data.table
r-doparallel
r-dorothea
r-downloader
r-htmltools
r-jpeg
r-knitr
r-matrixstats
r-motifmatchr
r-png
r-r.utils
r-reshape2
r-rmarkdown
r-stager
r-testthat
r-viper
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('83ea175de92d2fdd55287c94ce07b8a4')
b2sums=('5907f154c1e87e0ee9973cdb50e95604d78f3e12c79c122759ea953dbed7b4df60ebafe5b034ea349445a488d56ceda50dc2131c41bce2515d3c535e6a43e7e7')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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