blob: 3f632a7bba33df67b282b737596428990b487c14 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=MethReg
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=1.12.0
pkgrel=1
pkgdesc='Assessing the regulatory potential of DNA methylation regions or sites on gene transcription'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-annotationhub
r-delayedarray
r-dplyr
r-experimenthub
r-genomicranges
r-ggplot2
r-ggpubr
r-iranges
r-plyr
r-progress
r-pscl
r-readr
r-rlang
r-s4vectors
r-sesame
r-sesamedata
r-sfsmisc
r-stringr
r-summarizedexperiment
r-tibble
r-tidyr
)
optdepends=(
r-biocfilecache
r-biocstyle
r-biomart
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.hsapiens.ucsc.hg38
r-data.table
r-doparallel
r-dorothea
r-downloader
r-downloader
r-htmltools
r-jaspar2022
r-jpeg
r-knitr
r-matrixstats
r-motifmatchr
r-openxlsx
r-parallel
r-png
r-r.utils
r-reshape2
r-rmarkdown
r-stager
r-testthat
r-tfbstools
r-viper
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('56d0158f27fca8c25a26aceeffb3de7ffcdb98aade3ffb8748eee44d5b1114c3')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|