blob: 82c2e20fcece9368e191809f3a8fbf076437be73 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=methylPipe
_pkgver=1.38.0
pkgname=r-${_pkgname,,}
pkgver=1.38.0
pkgrel=1
pkgdesc='Base resolution DNA methylation data analysis'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocgenerics
r-biostrings
r-data.table
r-genomeinfodb
r-genomicalignments
r-genomicranges
r-gplots
r-gviz
r-iranges
r-marray
r-rsamtools
r-s4vectors
r-summarizedexperiment
)
optdepends=(
r-bsgenome.hsapiens.ucsc.hg18
r-knitr
r-methylseekr
r-txdb.hsapiens.ucsc.hg18.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('c04c3177e7930934f576188e3bdb9cd64f619618be44149502a8a57073b958ec')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|