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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=mia
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=1.12.0
pkgrel=1
pkgdesc='Microbiome analysis'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-ape
r-biocgenerics
r-biocparallel
r-biostrings
r-bluster
r-decipher
r-decontam
r-delayedarray
r-delayedmatrixstats
r-dirichletmultinomial
r-dplyr
r-iranges
r-matrixgenerics
r-multiassayexperiment
r-rlang
r-s4vectors
r-scater
r-scuttle
r-singlecellexperiment
r-summarizedexperiment
r-tibble
r-tidyr
r-treesummarizedexperiment
r-vegan
)
optdepends=(
r-ade4
r-biocstyle
r-biomformat
r-dada2
r-knitr
r-microbiomedatasets
r-patchwork
r-phyloseq
r-reldist
r-rmarkdown
r-stringr
r-testthat
r-yaml
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('512805cf6f77c62b25d95ebc3ed16988cf3297be5b712934c3f8130bcfa2c2f2')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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