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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=microbiomeMarker
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=1.10.0
pkgrel=1
pkgdesc='microbiome biomarker analysis toolkit'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-aldex2
r-ancombc
r-biobase
r-biocgenerics
r-biocparallel
r-biomformat
r-biostrings
r-caret
r-coin
r-complexheatmap
r-deseq2
r-dplyr
r-edger
r-ggplot2
r-ggsignif
r-ggtree
r-iranges
r-limma
r-magrittr
r-metagenomeseq
r-multtest
r-patchwork
r-phyloseq
r-plotroc
r-proc
r-purrr
r-rlang
r-s4vectors
r-tibble
r-tidyr
r-tidytree
r-vegan
r-yaml
)
optdepends=(
r-biocstyle
r-covr
r-e1071
r-glmnet
r-kernlab
r-knitr
r-matrix
r-ranger
r-rmarkdown
r-testthat
r-withr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('563e233c99e8f282f53297db41f0e2f342adac912dc99903b3784a772a3b871f')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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