blob: 508eeaef2c890623013d4fa91ea76b76663e7a17 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=MicrobiotaProcess
_pkgver=1.16.1
pkgname=r-${_pkgname,,}
pkgver=1.16.1
pkgrel=1
pkgdesc='an R package for analysis, visualization and biomarker discovery of microbiome'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-ape
r-biostrings
r-cli
r-coin
r-data.table
r-dplyr
r-dtplyr
r-foreach
r-ggfun
r-ggplot2
r-ggrepel
r-ggsignif
r-ggstar
r-ggtree
r-ggtreeextra
r-magrittr
r-patchwork
r-pillar
r-plyr
r-rlang
r-summarizedexperiment
r-tibble
r-tidyr
r-tidyselect
r-tidytree
r-treeio
r-vegan
r-zoo
)
optdepends=(
r-aplot
r-biocmanager
r-biomformat
r-decipher
r-dirichletmultinomial
r-forcats
r-ggalluvial
r-ggh4x
r-gghalves
r-ggnewscale
r-ggpp
r-ggside
r-ggupset
r-ggvenndiagram
r-glue
r-hopach
r-jsonlite
r-knitr
r-nlme
r-parallel
r-phangorn
r-phyloseq
r-prettydoc
r-purrr
r-randomforest
r-rmarkdown
r-s4vectors
r-scales
r-seqmagick
r-shadowtext
r-testthat
r-withr
r-yaml
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('bc3558548ee08078c69b96a7e3b7e8c323d279caa43460a30fddc4dc7e971ef4')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|