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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=MIGSA
_pkgver=1.21.0
pkgname=r-${_pkgname,,}
pkgver=1.21.0
pkgrel=3
pkgdesc='Massive and Integrative Gene Set Analysis'
arch=('any')
url="https://bioconductor.org/packages/3.16/${_pkgname}"
license=('GPL')
depends=(
r
r-annotationdbi
r-biobase
r-biocgenerics
r-biocparallel
r-data.table
r-edger
r-futile.logger
r-ggdendro
r-ggplot2
r-go.db
r-gostats
r-graph
r-gseabase
r-ismev
r-jsonlite
r-limma
r-matrixstats
r-org.hs.eg.db
r-rbgl
r-reshape2
r-rgraphviz
r-vegan
)
optdepends=(
r-biocstyle
r-breastcancermainz
r-breastcancernki
r-breastcancertransbig
r-breastcancerunt
r-breastcancerupp
r-breastcancervdx
r-knitr
r-mgsz
r-migsadata
r-runit
)
source=("https://bioconductor.org/packages/3.16/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('f5b65c10e0ae2d57e5de4fe84c800ffd5499203f1caa7fe0df6175143f4dfc2c')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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