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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=miloR
_pkgver=2.0.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Differential neighbourhood abundance testing on a graph"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
blas
lapack
r-biocgenerics
r-biocneighbors
r-biocparallel
r-biocsingular
r-cowplot
r-dplyr
r-edger
r-ggbeeswarm
r-ggplot2
r-ggraph
r-ggrepel
r-gtools
r-igraph
r-irlba
r-limma
r-matrixgenerics
r-matrixstats
r-numderiv
r-patchwork
r-rcolorbrewer
r-rcpp
r-s4vectors
r-singlecellexperiment
r-stringr
r-summarizedexperiment
r-tibble
r-tidyr
)
makedepends=(
r-rcpparmadillo
)
optdepends=(
r-biocstyle
r-covr
r-curl
r-knitr
r-magick
r-mousegastrulationdata
r-mousethymusageing
r-mvtnorm
r-rcurl
r-rmarkdown
r-scater
r-scran
r-scrnaseq
r-scuttle
r-testthat
r-uwot
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('f02be1539df5c6cfd31ae8042f78f274')
b2sums=('2a01b1ed954a83da6b5640145b41d25c3f67343a28307291f8bfe66f8ecb0462d024361e83882066409b2735fa824630d9903c28d857daf6655bc1dcc5f2e8a5')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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