PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=miRcomp
_pkgver=1.36.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Tools to assess and compare miRNA expression estimatation methods"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only OR GPL-3.0-only')
depends=(
  r-biobase
  r-mircompdata
)
optdepends=(
  r-biocgenerics
  r-biocstyle
  r-knitr
  r-rmarkdown
  r-runit
  r-shiny
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('f2dc7026533a1b60c30f91180486bdf4')
b2sums=('3192c73731adb972eaf997a4effe3a123d3e7c2b25360ed152fdea6ad7764e804b1d2f7911c7389f5afa99cab06597898c7a8c1e66317a3cb7cfb33cadd91b89')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}