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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=missMethyl
_pkgver=1.38.0
pkgname=r-${_pkgname,,}
pkgver=1.38.0
pkgrel=1
pkgdesc='Analysing Illumina HumanMethylation BeadChip Data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-annotationdbi
r-biasedurn
r-biobase
r-biocgenerics
r-genomicranges
r-go.db
r-illuminahumanmethylation450kanno.ilmn12.hg19
r-illuminahumanmethylation450kmanifest
r-illuminahumanmethylationepicanno.ilm10b4.hg19
r-illuminahumanmethylationepicmanifest
r-iranges
r-limma
r-methylumi
r-minfi
r-org.hs.eg.db
r-ruv
r-s4vectors
r-statmod
r-stringr
r-summarizedexperiment
)
optdepends=(
r-biocstyle
r-dmrcate
r-edger
r-experimenthub
r-knitr
r-minfidata
r-rmarkdown
r-tweedeseqcountdata
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('3c4addab6ac17add59fcfa6964195144aa713cfded6d8bdb258d3e6af651d83a')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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