blob: f7b75df16777f95a96af856ecbbe9431f56f131a (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=MoleculeExperiment
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Prioritising a molecule-level storage of Spatial Transcriptomics Data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biocparallel
r-cli
r-data.table
r-dplyr
r-ebimage
r-ggplot2
r-magrittr
r-purrr
r-rhdf5
r-rjson
r-rlang
r-s4vectors
r-spatialexperiment
r-terra
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('cfe686e0c6e5cc5d890c56b519d5642d')
b2sums=('6a95fcf7d8f3fa09c86ad4adb17d5457943b31ab823aaa0193ec3dc71022b2ac6e62936efd21a5bfa892fcfe1f48cd24a6661cd7bda480b74e89f673df9b6a40')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
|