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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=MoleculeExperiment
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Prioritising a molecule-level storage of Spatial Transcriptomics Data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biocparallel
r-cli
r-data.table
r-dplyr
r-ebimage
r-ggplot2
r-magrittr
r-purrr
r-rhdf5
r-rjson
r-rlang
r-s4vectors
r-spatialexperiment
r-terra
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('10384bcaa373eaaad343f189b151dee9')
b2sums=('afb24a5ae0141d35ee6b6b2cfc63648e6a12da84139b959880a65938d01f964c7ed38d3dc5c776d7d10b93a173d385e15dfcef2d76c3f362c3bb3cbe5b1b2fd3')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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