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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=monocle
_pkgver=2.34.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biobase
r-biocgenerics
r-biocviews
r-combinat
r-ddrtree
r-dplyr
r-fastica
r-ggplot2
r-hsmmsinglecell
r-igraph
r-irlba
r-leidenbase
r-limma
r-matrixstats
r-pheatmap
r-plyr
r-proxy
r-rann
r-rcpp
r-reshape2
r-rtsne
r-slam
r-stringr
r-tibble
r-vgam
r-viridis
)
optdepends=(
r-destiny
r-hmisc
r-knitr
r-scater
r-seurat
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6be2330eb42a8c8c4692d96aac05fb3d')
b2sums=('886cc75defa53571aebb287b26a2ead75df8b88a4516846e89d87ea0f58199c781cee1563c84ac8a6b09873f4658d02ec6ac38a4840fba351f3a19a84fde66c1')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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