blob: 9302a76d4025d3c734ee54bb7d6d773d234a5eb3 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=Moonlight2R
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Identify oncogenes and tumor suppressor genes from omics data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-annotationhub
r-biobase
r-biocgenerics
r-circlize
r-clusterprofiler
r-complexheatmap
r-doparallel
r-dose
r-dplyr
r-easypubmed
r-epimix
r-experimenthub
r-foreach
r-fuzzyjoin
r-genomicranges
r-geoquery
r-ggplot2
r-gplots
r-hiver
r-magrittr
r-org.hs.eg.db
r-parmigene
r-purrr
r-qpdf
r-randomforest
r-rcolorbrewer
r-readr
r-rismed
r-rtracklayer
r-seqminer
r-stringr
r-tibble
r-tidyheatmap
r-tidyr
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-devtools
r-knitr
r-png
r-rmarkdown
r-roxygen2
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('b0dd4a005ee752f5d6113ebca14602d6')
b2sums=('753e299bdc12b8becc409554c89d42419ddac99fc37285610e89b89902209fdb3052d0c8b3f21f1058dfd281ab6a826ee82198188cc536ff877e905bb392020d')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|