blob: 5dc437992c01d3bb43b95f35c28d7497b5b3adce (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=Motif2Site
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
r-biocgenerics
r-biostrings
r-bsgenome
r-edger
r-genomeinfodb
r-genomicalignments
r-genomicranges
r-iranges
r-mixtools
r-s4vectors
)
optdepends=(
r-biocstyle
r-bsgenome.ecoli.ncbi.20080805
r-bsgenome.hsapiens.ucsc.hg38
r-bsgenome.mmusculus.ucsc.mm10
r-bsgenome.scerevisiae.ucsc.saccer3
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('da11799c0e277a85f8f5f04c5cb91ff4')
b2sums=('55d79fe8a1f2601b37ab2e399e083eb59eab3d9a8926316e6058c031e0b779bbc999dc69e321484a7837fbcb2a56c8e4c10f467a5321b77b1e29bec613d9f3bd')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|