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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=MsDataHub
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Mass Spectrometry Data on ExperimentHub"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-experimenthub
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-dt
r-experimenthubdata
r-knitr
r-mzr
r-psmatch
r-qfeatures
r-rmarkdown
r-spectra
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('70c6eebcdeeb6474db9802057d0129ac')
b2sums=('ddbf3ec03458f5bda1d8f1f069c920bc453d5f0250803d1e3d70a1b398c2f9ca727e412fc44f7a162999d5080d0cd0ab955291f14bda8d40ec1fae6843ebda54')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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