blob: eb56bee3085b700a0191f1d7eba8be1b04e5308c (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=MsDataHub
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Mass Spectrometry Data on ExperimentHub"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-experimenthub
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-dt
r-experimenthubdata
r-knitr
r-mzr
r-psmatch
r-qfeatures
r-rmarkdown
r-spectra
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('315760cb18f34292e0349572be2492d3')
b2sums=('41a9f7b6633dbeea73397d3f5ec5d35f2878983263e6cfbf9ea28023e33a86eb24355af4bf0a8c3e5092d3d22ae3d6c0d5b1fa6a5526fc91cf14b16b3f9dd78e')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|