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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=MsDataHub
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Mass Spectrometry Data on ExperimentHub"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-experimenthub
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-dt
r-experimenthubdata
r-knitr
r-mzr
r-psmatch
r-qfeatures
r-rmarkdown
r-spectra
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('bc522c7b8986bb2d26244bba320ed7bc')
b2sums=('bcf7e0d10fad725c94c3bc2a3bc5f4cd0734a4d738d7258a79a7f6830f103d39556b392fb600404bfc0cde662f447d178c1a0f73d0642d4d75d43676904f0c43')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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