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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=mslp
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Predict synthetic lethal partners of tumour mutations"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-data.table
r-dorng
r-fmsb
r-foreach
r-magrittr
r-org.hs.eg.db
r-proc
r-randomforest
r-rankprod
)
checkdepends=(
r-tinytest
)
optdepends=(
r-biocstyle
r-dofuture
r-future
r-knitr
r-rmarkdown
r-roxygen2
r-tinytest
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('77a5b63f5921f90e6e6d7daa777bb0df')
b2sums=('0ab77c4b4bd2959091e662e5fef8e2e8ea97fbf79c995cd2c378f8c81f23c3af113907d471671f8e572766c0e8b0efd7e5ca4c1056af384dbc73b76f6ce4907a')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" Rscript --vanilla tinytest.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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