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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=MSnbase
_pkgver=2.34.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Base Functions and Classes for Mass Spectrometry and Proteomics"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-affy
r-biobase
r-biocgenerics
r-biocparallel
r-digest
r-ggplot2
r-impute
r-iranges
r-maldiquant
r-mscoreutils
r-mzid
r-mzr
r-pcamethods
r-plyr
r-protgenerics
r-psmatch
r-rcpp
r-s4vectors
r-scales
r-vsn
)
optdepends=(
r-annotationhub
r-biocstyle
r-gplots
r-gridextra
r-imputelcmd
r-knitr
r-magrittr
r-microbenchmark
r-msdata
r-norm
r-proloc
r-prolocdata
r-pryr
r-rdisop
r-rgl
r-rmarkdown
r-rols
r-roxygen2
r-rpx
r-shiny
r-summarizedexperiment
r-testthat
r-xml
r-zoo
r-magick
r-spectra
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('badde8ede1996b26acf6f0e9c115c67c')
b2sums=('46788ff6bd2112601300abe2af02ba1306fb4b4257ef91d29ca1bf2a9828c5aba53cbfd45b0f7645a6f964e22a06555397cffc1f862a4d8d4bc879969f33d919')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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