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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=MSnbase
_pkgver=2.28.1
pkgname=r-${_pkgname,,}
pkgver=2.28.1
pkgrel=1
pkgdesc='Base Functions and Classes for Mass Spectrometry and Proteomics'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-affy
r-biobase
r-biocgenerics
r-biocparallel
r-digest
r-ggplot2
r-impute
r-iranges
r-maldiquant
r-mscoreutils
r-mzid
r-mzr
r-pcamethods
r-plyr
r-protgenerics
r-rcpp
r-s4vectors
r-scales
r-vsn
r-xml
)
optdepends=(
r-annotationhub
r-biocstyle
r-gplots
r-gridextra
r-imputelcmd
r-knitr
r-magrittr
r-microbenchmark
r-msdata
r-norm
r-proloc
r-prolocdata
r-pryr
r-rdisop
r-rgl
r-rmarkdown
r-rols
r-roxygen2
r-rpx
r-shiny
r-summarizedexperiment
r-testthat
r-zoo
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('54df0a5aa0aa1c52f0d008faee610edf359c9039aa2d842526d4235b6aad4298')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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