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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=multicrispr
_pkgver=1.12.9
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Multi-locus multi-purpose Crispr/Cas design"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
r-biocgenerics
r-biostrings
r-bsgenome
r-crisprseek
r-data.table
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-ggplot2
r-karyoploter
r-magrittr
r-plyranges
r-rbowtie
r-reticulate
r-rtracklayer
r-stringi
r-tidyr
r-tidyselect
)
optdepends=(
r-annotationhub
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg38
r-bsgenome.mmusculus.ucsc.mm10
r-bsgenome.scerevisiae.ucsc.saccer1
r-ensembldb
r-iranges
r-knitr
r-magick
r-rmarkdown
r-testthat
r-txdb.mmusculus.ucsc.mm10.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('1eb85739f11d9bac705ffb44aa5cc541')
b2sums=('0d0d6327bdfc5b9dff2a886240a436b506cf6231d1d8602d3fc38ca8cd4ad523b33d99eac82eff829062abe7d2ae4b38ee61369f49f65f8fbb0d1acff0d36551')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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