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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=MultiRNAflow
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="An R package for integrated analysis of temporal RNA-seq data with multiple biological conditions"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biobase
r-complexheatmap
r-deseq2
r-factoextra
r-factominer
r-ggalluvial
r-ggplot2
r-ggplotify
r-ggrepel
r-gprofiler2
r-mfuzz
r-plot3d
r-plot3drgl
r-reshape2
r-s4vectors
r-summarizedexperiment
r-upsetr
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocgenerics
r-biocstyle
r-e1071
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('0ed0955827595d68f48de859abd31941')
b2sums=('c2bfb96a348f7b791595f103e99259bb3101c7768002894439b931fc4cea5e50db1740d4ef3f0be198290d1b05937dac12a89235c322e62f2d2d34841a7a00db')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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