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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=multiWGCNA
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="An R package for deeping mining gene co-expression networks in multi-trait expression data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-cowplot
r-data.table
r-dcanr
r-dplyr
r-flashclust
r-ggalluvial
r-ggplot2
r-ggrepel
r-igraph
r-patchwork
r-readr
r-reshape2
r-scales
r-stringr
r-summarizedexperiment
r-wgcna
)
checkdepends=(
r-experimenthub
r-testthat
)
optdepends=(
r-biocstyle
r-doparallel
r-experimenthub
r-knitr
r-markdown
r-rmarkdown
r-testthat
r-vegan
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('49bb403a208f87354b1aef9273ff7d9d')
b2sums=('c4b37bf83e3f603fb4b1b2be6bee91f28638f27ec81ab44645dc4f962226d982dbe4e9b0df247d6cb350cd208382a87a2168d747496df17fb90c5af246248b95')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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