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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=MungeSumstats
_pkgver=1.10.1
pkgname=r-${_pkgname,,}
pkgver=1.10.1
pkgrel=1
pkgdesc='Standardise summary statistics from GWAS'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-biostrings
r-bsgenome
r-data.table
r-dplyr
r-genomeinfodb
r-genomicranges
r-googleauthr
r-httr
r-iranges
r-jsonlite
r-magrittr
r-r.utils
r-rcurl
r-rtracklayer
r-stringr
r-variantannotation
)
optdepends=(
r-badger
r-biocgenerics
r-biocparallel
r-biocstyle
r-bsgenome.hsapiens.1000genomes.hs37d5
r-bsgenome.hsapiens.ncbi.grch38
r-covr
r-genomicfiles
r-knitr
r-markdown
r-matrixgenerics
r-rmarkdown
r-rsamtools
r-s4vectors
r-snplocs.hsapiens.dbsnp144.grch37
r-snplocs.hsapiens.dbsnp144.grch38
r-snplocs.hsapiens.dbsnp155.grch37
r-snplocs.hsapiens.dbsnp155.grch38
r-testthat
r-upsetr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('d3b1a86d512a0ec9e946444b2515250c11957937ca362268d0f1ad107b77f160')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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