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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=muscat
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=1.18.0
pkgrel=1
pkgdesc='Multi-sample multi-group scRNA-seq data analysis tools'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocparallel
r-blme
r-complexheatmap
r-data.table
r-deseq2
r-dplyr
r-edger
r-ggplot2
r-glmmtmb
r-limma
r-lme4
r-lmertest
r-matrixstats
r-progress
r-purrr
r-s4vectors
r-scales
r-scater
r-sctransform
r-scuttle
r-singlecellexperiment
r-summarizedexperiment
r-variancepartition
r-viridis
)
optdepends=(
r-biocstyle
r-countsimqc
r-cowplot
r-experimenthub
r-icobra
r-knitr
r-phylogram
r-rcolorbrewer
r-reshape2
r-rmarkdown
r-statmod
r-testthat
r-upsetr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('f105ef9ccbf35853b21e25215892923fb54e2b9a10ddf11f126e247307664ebd')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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