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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=musicatk
_pkgver=1.14.0
pkgname=r-${_pkgname,,}
pkgver=1.14.0
pkgrel=1
pkgdesc='Mutational Signature Comprehensive Analysis Toolkit'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('LGPL')
depends=(
r
r-biostrings
r-bsgenome
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.hsapiens.ucsc.hg38
r-bsgenome.mmusculus.ucsc.mm10
r-bsgenome.mmusculus.ucsc.mm9
r-complexheatmap
r-data.table
r-decomptumor2sig
r-deconstructsigs
r-dplyr
r-factoextra
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-ggplot2
r-ggpubr
r-ggrepel
r-gridextra
r-gtools
r-iranges
r-maftools
r-magrittr
r-matrixtests
r-mcmcprecision
r-nmf
r-philentropy
r-plotly
r-rlang
r-s4vectors
r-shiny
r-stringi
r-stringr
r-summarizedexperiment
r-tibble
r-tidyr
r-tidyverse
r-topicmodels
r-txdb.hsapiens.ucsc.hg19.knowngene
r-txdb.hsapiens.ucsc.hg38.knowngene
r-uwot
r-variantannotation
)
optdepends=(
r-biocstyle
r-covr
r-cowplot
r-knitr
r-qpdf
r-rmarkdown
r-shinyalert
r-shinybs
r-shinybusy
r-shinydashboard
r-shinyjqui
r-shinyjs
r-shinywidgets
r-sortable
r-survival
r-tcgabiolinks
r-testthat
r-withr
r-xvector
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('4be4a5746dee72b8aede9b1074cc9c20e00de0db7283bfab27f496790561e8d6')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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