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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=MutationalPatterns
_pkgver=3.14.0
pkgname=r-${_pkgname,,}
pkgver=3.14.0
pkgrel=1
pkgdesc='Comprehensive genome-wide analysis of mutational processes'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-biocgenerics
r-biostrings
r-bsgenome
r-cowplot
r-dplyr
r-genomeinfodb
r-genomicranges
r-ggalluvial
r-ggdendro
r-ggplot2
r-iranges
r-magrittr
r-nmf
r-pracma
r-purrr
r-rcolorbrewer
r-s4vectors
r-stringr
r-tibble
r-tidyr
r-variantannotation
)
optdepends=(
r-annotationdbi
r-biocstyle
r-biomart
r-bsgenome.hsapiens.ucsc.hg19
r-ccfindr
r-genomicfeatures
r-gridextra
r-knitr
r-rmarkdown
r-rtracklayer
r-testthat
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('c1485d75b1695ab4cf52f05774c6e52a442fe7e118e7c94ad57cb2210025ae6a')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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