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# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=NanoMethViz
_pkgver=2.8.1
pkgname=r-${_pkgname,,}
pkgver=2.8.1
pkgrel=1
pkgdesc='Visualise methlation data from Oxford Nanopore sequencing'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Apache')
depends=(
gcc
r
r-annotationdbi
r-assertthat
r-biocsingular
r-biostrings
r-bsseq
r-cli
r-cpp11
r-data.table
r-dbscan
r-dplyr
r-e1071
r-forcats
r-fs
r-genomicranges
r-ggplot2
r-ggrastr
r-glue
r-iranges
r-limma
r-patchwork
r-purrr
r-r.utils
r-rcpp
r-readr
r-rlang
r-rsamtools
r-s4vectors
r-scales
r-scico
r-stringr
r-summarizedexperiment
r-tibble
r-tidyr
r-withr
r-zlibbioc
)
optdepends=(
r-biocstyle
r-covr
r-dss
r-homo.sapiens
r-knitr
r-mus.musculus
r-org.hs.eg.db
r-org.mm.eg.db
r-rmarkdown
r-rtracklayer
r-testthat
r-txdb.hsapiens.ucsc.hg19.knowngene
r-txdb.hsapiens.ucsc.hg38.knowngene
r-txdb.mmusculus.ucsc.mm10.knowngene
r-txdb.mmusculus.ucsc.mm39.refgene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('9f6520a3ece38cdbecb95cecb86697d56dc1e6904763df5dc0b9c0943c5a9c67')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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