PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=Nebulosa
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Single-Cell Data Visualisation Using Kernel Gene-Weighted Density Estimation"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
  r-ggplot2
  r-ggrastr
  r-ks
  r-patchwork
  r-seuratobject
  r-singlecellexperiment
  r-summarizedexperiment
)
optdepends=(
  r-biocfilecache
  r-biocstyle
  r-covr
  r-dropletutils
  r-igraph
  r-knitr
  r-rmarkdown
  r-scater
  r-scran
  r-seurat
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('30b639f6fef1a59081db11c65d77fcf5')
b2sums=('bf62da4fb681ce2eb237801438f910a1b69b0fe3cd5cbbc8fd256ba76a56a13c7e4d15e4b1dd7bba567dfc6e0b62706ff1e96e45851846a12d835351a40f2075')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}