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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=netDx
_pkgver=1.16.0
pkgname=r-${_pkgname,,}
pkgver=1.16.0
pkgrel=1
pkgdesc='Network-based patient classifier'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-bigmemory
r-biocfilecache
r-combinat
r-doparallel
r-foreach
r-genomeinfodb
r-genomicranges
r-ggplot2
r-glmnet
r-httr
r-igraph
r-iranges
r-multiassayexperiment
r-plotrix
r-pracma
r-rappdirs
r-rcolorbrewer
r-reshape2
r-rocr
r-rtsne
r-s4vectors
)
optdepends=(
r-biocstyle
r-clusterexperiment
r-curatedtcgadata
r-knitr
r-netsmooth
r-rcy3
r-rmarkdown
r-scater
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('93885e7a15db9b43c032152c8953de163fecb5b22d0ba952bc06ac0f8b64f001')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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