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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=nipalsMCIA
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Multiple Co-Inertia Analysis via the NIPALS Method"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-complexheatmap
r-dplyr
r-fgsea
r-ggplot2
r-multiassayexperiment
r-pracma
r-rlang
r-rspectra
r-scales
r-summarizedexperiment
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocfilecache
r-biocstyle
r-circlize
r-ggpubr
r-knitr
r-piggyback
r-reshape2
r-rmarkdown
r-seurat
r-spatstat.explore
r-stringr
r-testthat
r-tidyverse
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('4092618c668e796e5fbaa4f6fe34bc2f')
b2sums=('331f310aa90a60f66efaf44d30118d37c038330e3c8bc23cabffeccb8768924f985bfd89ab0ff0aa6fb921c53136df7e9e8792d33b8a31bd6e40a51b5d6c6dcb')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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