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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=nnSVG
_pkgver=1.6.4
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Scalable identification of spatially variable genes in spatially-resolved transcriptomics data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biocparallel
r-brisc
r-matrixstats
r-singlecellexperiment
r-spatialexperiment
r-summarizedexperiment
)
checkdepends=(
r-scran
r-stexampledata
r-testthat
)
optdepends=(
r-biocstyle
r-ggplot2
r-knitr
r-rmarkdown
r-scran
r-stexampledata
r-testthat
r-weberdivechalcdata
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('7e39d32cf6dd4a19a46f0fa94980444d')
b2sums=('f9591212e953df191e0be6dc3eebda1898de3fe27b7db137b6edbfdebf2843b5a3160a79950a9762f38318d554e9811b7b6c4ef5e13ae21dce4e167714224a59')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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