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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=NoRCE
_pkgver=1.16.0
pkgname=r-${_pkgname,,}
pkgver=1.16.0
pkgrel=1
pkgdesc='NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-annotationdbi
r-biomart
r-dbi
r-dbplyr
r-dplyr
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-ggplot2
r-go.db
r-igraph
r-iranges
r-keggrest
r-png
r-rcurl
r-reactome.db
r-readr
r-reshape2
r-rsqlite
r-rtracklayer
r-rwikipathways
r-s4vectors
r-stringr
r-summarizedexperiment
r-tidyr
r-zlibbioc
)
optdepends=(
r-biocgenerics
r-knitr
r-markdown
r-methods
r-org.ce.eg.db
r-org.dm.eg.db
r-org.dr.eg.db
r-org.hs.eg.db
r-org.mm.eg.db
r-org.rn.eg.db
r-org.sc.sgd.db
r-rmarkdown
r-testthat
r-txdb.celegans.ucsc.ce11.refgene
r-txdb.dmelanogaster.ucsc.dm6.ensgene
r-txdb.drerio.ucsc.danrer10.refgene
r-txdb.hsapiens.ucsc.hg19.knowngene
r-txdb.hsapiens.ucsc.hg38.knowngene
r-txdb.mmusculus.ucsc.mm10.knowngene
r-txdb.rnorvegicus.ucsc.rn6.refgene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('7678e903cdc62c43d8d4037a381d24b6f7aa30ecc2b2b956b5442d27eb1f2236')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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