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# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=NxtIRFcore
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=1.6.0
pkgrel=3
pkgdesc='Core Engine for NxtIRF: a User-Friendly Intron Retention and Alternative Splicing Analysis using the IRFinder Engine'
arch=('x86_64')
url="https://bioconductor.org/packages/3.17/${_pkgname}"
license=('MIT')
depends=(
r
r-annotationhub
r-biocfilecache
r-biocgenerics
r-biocparallel
r-biostrings
r-bsgenome
r-data.table
r-delayedarray
r-delayedmatrixstats
r-fst
r-genefilter
r-genomeinfodb
r-genomicranges
r-ggplot2
r-hdf5array
r-iranges
r-magrittr
r-nxtirfdata
r-plotly
r-r.utils
r-rcpp
r-rcppprogress
r-rhdf5
r-rtracklayer
r-s4vectors
r-summarizedexperiment
r-zlibbioc
gcc
)
optdepends=(
r-crayon
r-deseq2
r-doubleexpseq
r-egg
r-knitr
r-limma
r-openssl
r-pheatmap
r-rmarkdown
r-rsubread
r-shiny
r-testthat
)
source=("https://bioconductor.org/packages/3.17/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('c29e7033c51442003740b06d419179261134eae0a541337dbd156565762166f4')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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