blob: cc59d8916cb8087b66cf96176c0494190d6a8e5d (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=OGRE
_pkgver=1.16.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Calculate, visualize and analyse overlap between genomic regions"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationhub
r-assertthat
r-data.table
r-dt
r-genomeinfodb
r-genomicranges
r-ggplot2
r-gviz
r-iranges
r-rtracklayer
r-s4vectors
r-seqinfo
r-shiny
r-shinybs
r-shinydashboard
r-shinyfiles
r-tidyr
)
checkdepends=(
r-testthat
)
optdepends=(
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('fe5fac5c93b11989a8d912115f5fa0b7')
b2sums=('39e3c90ce041856a1ce771e58f07158ca525759a4739aee57946e6de793a9d2b752a0df2978014ddac5938d68ceeaeb79bd01586e11be58f66a5f7e120b6e8ec')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|