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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=oligo
_pkgver=1.70.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Preprocessing tools for oligonucleotide arrays"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('LGPL-2.0-or-later')
depends=(
r-affxparser
r-affyio
r-biobase
r-biocgenerics
r-biostrings
r-dbi
r-ff
r-oligoclasses
r-preprocesscore
r-rsqlite
r-zlibbioc
zlib
)
optdepends=(
r-acme
r-annotationdbi
r-biocstyle
r-biomart
r-bsgenome.hsapiens.ucsc.hg18
r-genefilter
r-hapmap100kxba
r-knitr
r-limma
r-maqcexpression4plex
r-oligodata
r-pd.hg.u95av2
r-pd.hg18.60mer.expr
r-pd.huex.1.0.st.v2
r-pd.hugene.1.0.st.v1
r-pd.mapping50k.xba240
r-rcolorbrewer
r-rcurl
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('7596c63194f0bf3e58feaa2a854c2061')
b2sums=('862daeda207dbe4b388cbffd373bed268a120a16e9a33694e7c1c54fb12db835322ae8178631c6813ede645d6cb9e7f9b01c38c4f23d4cdfc46fac37572b0d1e')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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