blob: 9c393b422959f4cc37d41eee573aab27908e964e (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=oligo
_pkgver=1.66.0
pkgname=r-${_pkgname,,}
pkgver=1.66.0
pkgrel=1
pkgdesc='Preprocessing tools for oligonucleotide arrays'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('LGPL')
depends=(
r
r-affxparser
r-affyio
r-biobase
r-biocgenerics
r-biostrings
r-dbi
r-ff
r-oligoclasses
r-preprocesscore
r-rsqlite
r-zlibbioc
)
optdepends=(
r-acme
r-annotationdbi
r-biocstyle
r-biomart
r-bsgenome.hsapiens.ucsc.hg18
r-domc
r-dompi
r-genefilter
r-hapmap100kxba
r-knitr
r-limma
r-maqcexpression4plex
r-oligodata
r-pd.hg.u95av2
r-pd.hg18.60mer.expr
r-pd.huex.1.0.st.v2
r-pd.hugene.1.0.st.v1
r-pd.mapping50k.xba240
r-rcolorbrewer
r-rcurl
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('e6d2b6395e2d73094095fcac6b6271fd48a3c291dc4e5e86e8d45b4f352e165f')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|