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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=oligoClasses
_pkgver=1.66.0
pkgname=r-${_pkgname,,}
pkgver=1.66.0
pkgrel=1
pkgdesc='Classes for high-throughput arrays supported by oligo and crlmm'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-affyio
r-biobase
r-biocgenerics
r-biocmanager
r-biostrings
r-dbi
r-ff
r-foreach
r-genomicranges
r-iranges
r-rsqlite
r-s4vectors
r-summarizedexperiment
)
optdepends=(
r-crlmm
r-domc
r-dompi
r-doparallel
r-doredis
r-dosnow
r-genomewidesnp5crlmm
r-genomewidesnp6crlmm
r-hapmapsnp5
r-hapmapsnp6
r-human370v1ccrlmm
r-pd.genomewidesnp.5
r-pd.genomewidesnp.6
r-pd.mapping250k.nsp
r-pd.mapping250k.sty
r-pd.mapping50k.hind240
r-pd.mapping50k.xba240
r-runit
r-vanillaice
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('962c4f90080dd104bdaeb91178baa1552f761d3261130695bfd2667e2b732c96')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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