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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=omada
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Machine learning tools for automated transcriptome clustering analysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-clvalid
r-dicer
r-dplyr
r-fpc
r-genieclust
r-ggplot2
r-glmnet
r-kernlab
r-pdfcluster
r-rcpp
r-reshape
)
checkdepends=(
r-testthat
)
optdepends=(
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6f2b574eef1d352e074a064d77b6bf45')
b2sums=('37b754cf1ba17f21df3432e85f7dfa114c621b89b8e599194cf7f2c49a399c8c4e50713958eba571eba45e7ee1e53e0f2cbaa7dc155d9aeef89a79321150a50c')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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