blob: e02f0bf58856be08265e324bbda28e3080f990b0 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=omicsViewer
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Interactive and explorative visualization of SummarizedExperssionSet or ExpressionSet using omicsViewer"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-only')
depends=(
r-beeswarm
r-biobase
r-curl
r-drc
r-dt
r-fastmatch
r-fgsea
r-flatxml
r-ggplot2
r-ggseqlogo
r-htmlwidgets
r-httr
r-matrixstats
r-networkd3
r-openxlsx
r-plotly
r-psych
r-rcolorbrewer
r-reshape2
r-rocr
r-rsqlite
r-s4vectors
r-shiny
r-shinybusy
r-shinycssloaders
r-shinyjs
r-shinythemes
r-shinywidgets
r-stringr
r-summarizedexperiment
r-survminer
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-unittest
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('239148f41b6a545addcf27cf6489fe14')
b2sums=('55141ad7fdbbec1bbb4d4987c97673803b796a74524cb749c58e2f565d72b8c7ab489628536b09f4980b1f30fcf860fefe3a05d1d374647af4f5c0625b2a809e')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|