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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=OmnipathR
_pkgver=3.14.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="OmniPath web service client and more"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-checkmate
r-crayon
r-curl
r-digest
r-dplyr
r-httr
r-igraph
r-jsonlite
r-later
r-logger
r-lubridate
r-magrittr
r-progress
r-purrr
r-rappdirs
r-readr
r-readxl
r-rlang
r-rmarkdown
r-rvest
r-stringi
r-stringr
r-tibble
r-tidyr
r-tidyselect
r-withr
r-xml2
r-yaml
r-r.utils
r-vctrs
r-rsqlite
r-xml
r-zip
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-bookdown
r-ggplot2
r-ggraph
r-gprofiler2
r-knitr
r-mlrmbo
r-parallelmap
r-paramhelpers
r-rgraphviz
r-sigmajs
r-smoof
r-suprahex
r-testthat
r-r.matlab
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d2e2da1697eb72a8c6313883043682ca')
b2sums=('e6f82a9ae8bea3952bb6a0d5f54c0e904b8e280101007d771da274bdfeb5f57496dee11706666ec6dc1847375b1687307d2ddc84394f099443864b643e5bcd6e')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
#check() {
# cd "$_pkgname/tests"
# R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
#}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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