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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ontoProc
_pkgver=1.26.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="processing of ontologies of anatomy, cell lines, and so on"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationhub
r-biobase
r-biocfilecache
r-dplyr
r-dt
r-graph
r-httr
r-igraph
r-magrittr
r-ontologyindex
r-ontologyplot
r-r.utils
r-reticulate
r-rgraphviz
r-s4vectors
r-shiny
r-summarizedexperiment
)
optdepends=(
r-annotationdbi
r-biocstyle
r-celldex
r-knitr
r-org.hs.eg.db
r-org.mm.eg.db
r-rmarkdown
r-singlecellexperiment
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('3b97b2891024222d839bce78e279df49')
b2sums=('d64ba95b9d973b11d3222eac4a8665ea7522f79139dfe4abfc06940c868dfb9bb3668991e5444361f862e7b42427c9c82d9e2bdcfd515887492213e5c3c887d6')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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