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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=openCyto
_pkgver=2.18.0
pkgname=r-${_pkgname,,}
pkgver=2.18.0
pkgrel=1
pkgdesc='Hierarchical Gating Pipeline for flow cytometry data'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('custom')
depends=(
r
r-bh
r-biobase
r-biocgenerics
r-cpp11
r-data.table
r-flowclust
r-flowcore
r-flowviz
r-flowworkspace
r-graph
r-ncdfflow
r-rbgl
r-rcolorbrewer
)
optdepends=(
r-cytoml
r-flowstats
r-flowworkspacedata
r-ggcyto
r-knitr
r-markdown
r-mass
r-parallel
r-rmarkdown
r-testthat
r-tools
r-utils
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('3cd6fbf5fed3da2ec60d9c18373effc66595d51625f5782860940c2acbdec51e')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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