PKGBUILD


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40

# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=ORFhunteR
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=1.12.0
pkgrel=1
pkgdesc='Predict open reading frames in nucleotide sequences'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
  r
  r-biostrings
  r-bsgenome.hsapiens.ucsc.hg38
  r-data.table
  r-peptides
  r-randomforest
  r-rcpp
  r-rtracklayer
  r-stringr
  r-xfun
)
optdepends=(
  r-biocstyle
  r-knitr
  r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('77148a86349d6aa2138c977b8529ca2c8a43cd40a9b9bed7a4ab3b8a83441a2a')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: