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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=OrganismDbi
_pkgver=1.50.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Software to enable the smooth interfacing of different database packages"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-biobase
r-biocgenerics
r-biocmanager
r-dbi
r-genomicfeatures
r-genomicranges
r-graph
r-iranges
r-rbgl
r-s4vectors
r-txdbmaker
)
optdepends=(
r-annotationhub
r-biocstyle
r-biomart
r-bsgenome.hsapiens.ucsc.hg19
r-fdb.ucsc.trnas
r-homo.sapiens
r-knitr
r-mirbase.db
r-rattus.norvegicus
r-rmariadb
r-rtracklayer
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('76b2e1bf222089715a7e1c0a0c4f31be')
b2sums=('b6aaaca6acfc39cf7e4de3bc4ea8d895b4fdd32976ebbff85b9d9e10de9d64e6f1602f13c2191a415c9b41a6488f1a0227f4060f5fe91bd3f194509e15755951')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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